SNP Profiles matching PA 156 [PER]

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_Input profile	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
1._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
2._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
3._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
4._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
5._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
6._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
7._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
8._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
9._RUQ_1531	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
10._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
11._PA_156_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
12._GC-05-137-3-39	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
13._PA_186_[PER]	CC	AG	GG	CT	TT	CC	TT	TT	CC	AA	GG	CC	AG	CC
14._RUQ_1531	_	AG	GG	CT	_	_	_	TT	_	_	_	CC	AG	_
15._RUQ_1567	_	AG	GG	CT	_	_	_	TT	_	_	_	CC	AG	_
16._EET_400_[ECU]	CC	AG	GG	CC	TT	CC	TT	TT	CC	AA	GG	CC	AG	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
1._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
2._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
3._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
4._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
5._GC-05-137-3-39	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
6._GC-05-137-3-39	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
7._GC-05-137-3-39	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
8._GC-05-137-3-39	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
9._RUQ_1531	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
10._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
11._PA_156_[PER]	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
12._GC-05-137-3-39	AA	CG	TT	CC	GG	GG	AA	TT	CC	CG	TT	CC	AC	AA
13._PA_186_[PER]	AA	CG	TT	CC	GG	-	AA	TT	CC	CG	TT	CC	AC	AA
14._RUQ_1531	_	_	_	CC	GG	GG	_	TT	CC	CG	TT	CC	AC	AA
15._RUQ_1567	_	_	_	CC	GG	GG	_	TT	AC	CG	TT	CT	CC	AA
16._EET_400_[ECU]	AA	CG	TT	CC	GG	GG	AA	TT	CC	GG	TT	CC	AC	AA

	29	30	31	32	33	34	35	36	37	38
_Input profile	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
1._PA_156_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
2._PA_156_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
3._PA_156_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
4._PA_156_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
5._GC-05-137-3-39	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
6._GC-05-137-3-39	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
7._GC-05-137-3-39	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
8._GC-05-137-3-39	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
9._RUQ_1531	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
10._PA_156_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
11._PA_156_[PER]	GG	AA	CC	AA	AA	_	GG	AC	AT	GG	X_X	X_X	X_X	X_X
12._GC-05-137-3-39	GG	AA	CC	AA	AA	_	GG	AC	AT	GG	X_X	X_X	X_X	X_X
13._PA_186_[PER]	GG	AA	CC	AA	AA	CC	GG	AC	AT	GG	X_X	X_X	X_X	X_X
14._RUQ_1531	_	AA	CC	AA	AA	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
15._RUQ_1567	_	AA	CC	AA	AA	CC	GG	AC	_	_	X_X	X_X	X_X	X_X
16._EET_400_[ECU]	GG	AA	CC	AA	AC	CT	GG	AC	AT	GG	X_X	X_X	X_X	X_X

Input profile: PA_156_[PER]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D295 T1

Dapeng Zhang, 2016

1._PA_156_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 5 > FP

Dapeng Zhang, 2016

2._PA_156_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 4 > FP

Dapeng Zhang, 2016

3._PA_156_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 3 > FP

Dapeng Zhang, 2016

4._PA_156_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 2

Dapeng Zhang, 2016

5._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

7._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

8._PA_156_[PER] GC-05-137-3-39

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

9._PA_156_[PER] RUQ_1531

identical
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._PA_156_[PER]

identical
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row1 C0184 28

Dapeng Zhang, 2016

11._PA_156_[PER]

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

13._PA_186_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 446

Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

identical
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

15._PA_39_[PER] RUQ_1567

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._EET_400_[ECU]

93.4 %
38 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP193	34	TcSNP151	35	TcSNP150
36	TcSNP144	37	TcSNP32	38	TcSNP25